Showing posts with label mind. Show all posts
Showing posts with label mind. Show all posts

Rethinking Innateness: A Connectionist Perspective on Development (Neural Networks and Connectionist Modeling) Review

Rethinking Innateness: A Connectionist Perspective on Development (Neural Networks and Connectionist Modeling)
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This book contains some thoughtful reasons for believing that many evolutionary psychologists overestimate how much information about the human mind is encoded in genes. However, it is mixed in with some highly technical developmental neurobiology that only a few specialists are likely to find interesting.
For nonspecialists, David Buller's book Adapting Minds says similar things about innateness in a style that is more suited for laymen.

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Rethinking Innateness asks the question, "What does it really mean to say that a behavior is innate?" The authors describe a new framework in which interactions, occurring at all levels, give rise to emergent forms and behaviors. These outcomes often may be highly constrained and universal, yet are not themselves directly contained in the genes in any domain-specific way.One of the key contributions of Rethinking Innateness is a taxonomy of ways in which a behavior can be innate. These include constraints at the level of representation, architecture, and timing; typically, behaviors arise through the interaction of constraints at several of these levels.The ideas are explored through dynamic models inspired by a new kind of "developmental connectionism," a marriage of connectionist models and developmental neurobiology, forming a new theoretical framework for the study of behavioral development. While relying heavily on the conceptual and computational tools provided by connectionism, Rethinking Innateness also identifies ways in which these tools need to be enriched by closer attention to biology.

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Methods in Neuronal Modeling - 2nd Edition: From Ions to Networks (Computational Neuroscience) Review

Methods in Neuronal Modeling - 2nd Edition: From Ions to Networks (Computational Neuroscience)
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Great book for the theorist and experimentalist! I used the section on Epilepsy and the Neural Code for a grant I wrote. This book is a great reference and time spent reading it is very well rewarded. I bought the 1st & 2nd editions which are very different. Both editions are worth buying if one is involved with computer modeling, computation, mathematics, and plain old fashion recording neurophysiology.

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Much research focuses on the question of how information is processed innervous systems, from the level of individual ionic channels to large-scale neuronalnetworks, and from "simple" animals such as sea slugs and flies to cats andprimates. New interdisciplinary methodologies combine a bottom-up experimentalmethodology with the more top-down-driven computational and modeling approach. Thisbook serves as a handbook of computational methods and techniques for modeling thefunctional properties of single and groups of nerve cells.The contributors highlightseveral key trends: (1) the tightening link between analytical/numerical models andthe associated experimental data, (2) the broadening of modeling methods, at boththe subcellular level and the level of large neuronal networks that incorporate realbiophysical properties of neurons as well as the statistical properties of spiketrains, and (3) the organization of the data gained by physical emulation of thenervous system components through the use of very large scale circuit integration(VLSI) technology.The field of neuroscience has grown dramatically since the firstedition of this book was published nine years ago. Half of the chapters of thesecond edition are completely new; the remaining ones have all been thoroughlyrevised. Many chapters provide an opportunity for interactive tutorials andsimulation programs. They can be accessed via Christof Koch's Website.Contributors :Larry F. Abbott, Paul R. Adams, Hagai Agmon-Snir, James M. Bower, Robert E. Burke,Erik de Schutter, Alain Destexhe, Rodney Douglas, Bard Ermentrout, FabrizioGabbiani, David Hansel, Michael Hines, Christof Koch, Misha Mahowald, Zachary F.Mainen, Eve Marder, Michael V. Mascagni, Alexander D. Protopapas, Wilfrid Rall, JohnRinzel, Idan Segev, Terrence J. Sejnowski, Shihab Shamma, Arthur S. Sherman, PaulSmolen, Haim Sompolinsky, Michael Vanier, Walter M. Yamada.

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Modeling Brain Function: The World of Attractor Neural Networks Review

Modeling Brain Function: The World of Attractor Neural Networks
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The study of the physics of the brain from the standpoint of dynamical systems was very popular during the 1980's. The theory of chaotic dynamical systems, and the accompanying concepts of strange attractors, horseshoe maps, and fractal basins of attraction was the subject of intense research at that time. It was inevitable perhaps that these theories would be applied to the understanding of the brain, given the dynamical nature of the neuronal synapse. This book, published in 1989, gives a good overview of what was known at the time. It could be read by anyone with a background in dynamical systems and some elementary knowledge of brain biology. The mathematics is also straightforward in that the author does not bring in any of the heavy tools from differential topology or measure theory, which is normally done in discussions of dynamical systems.
There are some points made in the book that must be understood by the reader because the author feels that they are needed to build a successful model of the brain. For example, he discusses the notion of an `input system', which is a system that, for each input, produces and output with the same "status." Cognitive discrimination must be used at the input level, if one is to avoid the use of the `homunculus' (the little external observer), for distinguishing between "good" and "bad" outputs. The major task in the author's view is to produce "exceptional" input-output relations, i.e. relations that correspond to intuitions about cognitive processes. A successful brain model, i.e. one that is able to incorporate memory, should be able to distinguish between stimuli that are familiar from those that are to be submitted to the brain for processing or learning. Thus the model must avoid the use of what the author calls `spontaneous computations', which require an external observer (the homunculus again) to interpret the relation between the input and the output. The author gives an example of a system that performs only spontaneous computations early on in the book. Hence the author proposes the use of artificial neural networks (ANNs) to avoid the occurrence of spontaneous computations. An ANN organizes stimuli in association classes represented by an attractor, and all the stimuli in a particular class are associated with the attractor to which they flow. The author feels that ANNs are more adept at respecting the requirement that for mental computations, which are essentially operations on temporal sequences of data, some record of the initial input sequence must be carried along on a parallel channel, in order to provide the outcome with specific "meaning" and a correspondence to the assigned task.
These considerations on the dependence of the processing on the initial input motivate the author to discuss the role of ergodicity in the dynamics of the neural systems of the brain. As the author shows, any generic system subjected to noise will be ergodic, so that eventually the system will access each of its possible states in a manner that is completely independent of the initial state. The author points out two ways in which ergodicity can be avoided: one is to assume that the network is noiseless, and thus only certain moves are allowed from each vertex; the other is to assume that `cooperative phenomena' is present. Since the first possibility is rather exceptional, the author chooses the second, and gives detailed discussion on how cooperative behavior can arise in ANNs. One interesting, and ubiquitous example that he discusses for cooperativity as an emergent property is the Ising model. Mathematically, the breaking of ergodicity involves the taking of the thermodynamic limit, and a necessary condition for emergence is this context is the asymptotic degeneracy of the eigenvalues. To illustrate how this is done, the author uses the solution of a master equation that characterizes the probabilities of making transitions from one state to another in the system.
In order to build a credible model of the neuronal processes of the brain, the author is aware that such a model has to be able to deal with input in the form of temporal sequences, and not just single patterns. He devotes an entire chapter to this in the book, motivating his discussion with the notion of a `central pattern generator' (CPG). The simplicity of CPGs is a concern and the author is aware that such simplicity does not exist in models of cognitive processes. Nevertheless the modeling of CPGs using neural networks can add credence to the program to model general brain processes in terms of neural networks, complex as they can be.
One of course must be able to deal with both the storage and the retrieval of temporal sequences. After discussing some of the early research dealing with these needs, the author then reviews a strategy for dealing with temporal sequences that involves the notion of a `quasi-attractor', which is a network state that acts like an attractor for a short period of time. Quasi-attractors are used to delay the transfer of information out of the attractor. Thus the transitions are governed by synapses that have a time delay. The influence of a pre-synaptic neuron through these synapses will arrive later than the influence coming through a `stabilizing' synapse. The latter type of synapse arises because of the `stabilizing' term in the network model that ensures that if the network is in a state that is identical to a stored pattern then the network will remain there. The author shows how the network can use these delayed transitions to deal with temporal sequences in a manner that is acceptable, i.e. in a way that the `cognition time' is of the order of magnitude of the delay. The author discusses an example dealing with the counting of chimes, in order to give credence to his constructions. In this example it is seen that the network resides in each of the quasi-attractors for a long enough time so as to allow the output neurons to identify the cognitive event.

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Exploring one of the most exciting and potentially rewarding areas of scientific research, the study of the principles and mechanisms underlying brain function, this book introduces and explains the techniques brought from physics to the study of neural networks and the insights they have stimulated.Substantial progress in understanding memory, the learning process, and self-organization by studying the properties of models of neural networks have resulted in discoveries of important parallels between the properties of statistical, nonlinear cooperative systems in physics and neural networks. The author presents a coherent and clear, nontechnical view of all the basic ideas and results.More technical aspects are restricted to special sections and appendices in each chapter.

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Tutorial on Neural Systems Modeling Review

Tutorial on Neural Systems Modeling
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We used this book for the upper-level undergraduate students in an interdisciplinary computational neuroscience course at a small liberal arts college. This is a fine, well-written book. One of the strengths of this book is that it starts with very basic programming in Matlab, so that the students without programming backgrounds can easily follow along. The programs in the book are well commented, and they progress slowly and logically in complexity. More advanced math topics are well separated out in Math Boxes. The examples of the neural systems are covered in enough (but not too much) details to be interesting and accessible to the readers. The book is definitely considerate of and sensitive to the wonderfully interdisciplinary nature of this field, so that the materials can be digested by people with different backgrounds. One can not contain all the topics in computational neuroscience in a single book, but this book does a great job of covering many important and interesting ideas/areas (Hebbian learning, Hopfield model, lateral inhibition, adaptation, supervised and unsupervised learning, etc.).
It works very well as an introductory textbook (or tutorial) of the field. The codes and the discussions are clear and simple (not intended as an advanced textbook), and to me, that's the strength and unique quality of this book.
By the way, most of the computer programs listed in the book work well with Octave (as well as Matlab).

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Neural systems models are elegant conceptual tools that provide satisfying insight into brain function. The goal of this new book is to make these tools accessible. It is written specifically for students in neuroscience, cognitive science, and related areas who want to learn about neural systems modeling but lack extensive background in mathematics and computer programming.The book opens with an introduction to computer programming. Each of twelve subsequent chapters presents a different modeling paradigm by describing its basic structure and showing how it can be applied in understanding brain function. The text guides the reader through short, simple computer programs printed in the book and available by download at the companion website that implement the paradigms and simulate real neural systems. Motivation for the simulations is provided in the form of a narrative that places specific aspects of neural system behavior in the context of more general brain function. The narrative integrates instruction for using the programs with description of neural system function, and readers can actively experience the fun and excitement of doing the simulations themselves. Designed as a hands-on tutorial for students, this book also serves instructors as both a teaching tool and a source of examples and exercises that provide convenient starting points for more in-depth exploration of topics of their own specific interest.The distinguishing pedagogical feature of this book is its computer programs, written in MATLAB, that help readers develop basic skill in the area of neural systems modeling. (All of the program files are available online via the book s companion website. Actual data on real neural systems is presented in the book for comparison with the results of the simulations. Also included are asides ( Math Boxes ) that present mathematical material that is relevant but not essential to running the programs. Exercises and references at the end of each chapter invite readers to explore each topic area on their own.

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